Example Data Set with ESBL Test Outcomes

Source: R/data.R

This data set contains phenotypic test outcomes of the presence of ESBL (Extended Spectrum Beta-Lactamase) genes, with the minimum inhibitory concentrations (MIC, in mg/L) for 17 antibiotic drugs.

esbl_tests

Format

A tibble/data.frame with 500 observations and 19 variables:

  • esbl: Outcome of ESBL test (TRUE (n = 250), FALSE (n = 250))

  • genus: Taxonomic genus of the bacteria (Citrobacter (n = 42), Enterobacter (n = 30), Escherichia (n = 301), Klebsiella (n = 70), Morganella (n = 24), Proteus (n = 33))

  • AMC: MIC values of amoxicillin/clavulanic acid

  • AMP: MIC values of ampicillin

  • TZP: MIC values of piperacillin/tazobactam

  • CXM: MIC values of cefuroxime

  • FOX: MIC values of cefoxitin

  • CTX: MIC values of cefotaxime

  • CAZ: MIC values of ceftazidime

  • GEN: MIC values of gentamicin

  • TOB: MIC values of tobramycin

  • TMP: MIC values of trimethoprim

  • SXT: MIC values of trimethoprim/sulfamethoxazole

  • NIT: MIC values of nitrofurantoin

  • FOS: MIC values of fosfomycin

  • CIP: MIC values of ciprofloxacin

  • IPM: MIC values of imipenem

  • MEM: MIC values of meropenem

  • COL: MIC values of colistin

Examples

print(esbl_tests, n = 5)
#> # A tibble: 500 × 19
#>   esbl  genus    AMC   AMP   TZP   CXM   FOX   CTX   CAZ   GEN   TOB   TMP   SXT
#>   <lgl> <chr>  <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 FALSE Esche…    32    32     4    64    64  8     8        1     1  16      20
#> 2 FALSE Esche…    32    32     4    64    64  4     8        1     1  16     320
#> 3 FALSE Esche…     4     2    64     8     4  8     0.12    16    16   0.5    20
#> 4 FALSE Klebs…    32    32    16    64    64  8     8        1     1   0.5    20
#> 5 FALSE Esche…    32    32     4     4     4  0.25  2        1     1  16     320
#> # ℹ 495 more rows
#> # ℹ 6 more variables: NIT <dbl>, FOS <dbl>, CIP <dbl>, IPM <dbl>, MEM <dbl>,
#> #   COL <dbl>