All functions

confusion_matrix()

Confusion Matrix Metrics

mean_harmonic() mean_geometric()

Different Means

se() ci() sum_of_squares() cv() cqv() mse() mape() rmse() mae() z_score() midhinge() ewma() rr_ewma() normalise() normalize() scale_sd() centre_mean() percentiles() deciles()

Distribution Metrics

early_warning_biomarker()

Early Warning for Biomarkers

early_warning_cluster() n_clusters() has_clusters() has_ongoing_cluster() has_cluster_before() has_cluster_after()

Early Warning for Disease Clusters

esbl_tests

Example Data Set with ESBL Test Outcomes

impute() is_imputed() get_mice()

Impute: Filling Missing Values

ml_decision_trees() ml_linear_regression() ml_logistic_regression() ml_neural_network() ml_nearest_neighbour() ml_random_forest() ml_xg_boost() confusion_matrix(<certestats_ml>) autoplot(<certestats_ml>) predict(<certestats_ml>) apply_model_to() get_metrics() get_accuracy() get_kappa() get_recipe() get_specification() get_rows_testing() get_rows_training() get_original_data() get_roc_data() get_coefficients() get_model_variables() get_variable_weights() tune_parameters() autoplot(<certestats_tuning>) check_testing_predictions()

Create a Machine Learning (ML) Model

any() all() mean() sum() prod() min() max() pmin() pmax() range() sd() var() median() fivenum() quantile() IQR()

Mathematical Functions With Global na.rm

moving_average() moving_sum() moving_Q1() moving_Q3() moving_fn()

Moving Average

normality()

Normality Analysis

qc_rule1() qc_rule2() qc_rule3() qc_rule4() qc_rule5() qc_rule6() qc_rule7() qc_rule8() qc_rule_text() qc_test()

Quality Control (QC) Rules

regression() plot(<certestats_reg>) autoplot(<certestats_reg>)

Fast Regression Models

remove_outliers()

Remove Outliers

row_function()

Apply Function per Row

weighted_mean() weighted_median() weighted_Q1() weighted_Q3() weighted_fn()

Weighted Mean