as.binary() is.binary() try_binary()
as.binary()
is.binary()
try_binary()
Work with Binary Columns
confusion_matrix()
Confusion Matrix Metrics
detect_biomarker_changes()
Detect Unexpected Changes in Biomarkers
detect_disease_clusters() n_clusters() has_clusters() has_ongoing_cluster() has_cluster_before() has_cluster_after()
detect_disease_clusters()
n_clusters()
has_clusters()
has_ongoing_cluster()
has_cluster_before()
has_cluster_after()
Detect Disease Clusters
mean_harmonic() mean_geometric()
mean_harmonic()
mean_geometric()
Different Means
se() ci() sum_of_squares() cv() cqv() mse() mape() rmse() mae() z_score() midhinge() ewma() rr_ewma() normalise() normalize() scale_sd() centre_mean() percentiles() deciles()
se()
ci()
sum_of_squares()
cv()
cqv()
mse()
mape()
rmse()
mae()
z_score()
midhinge()
ewma()
rr_ewma()
normalise()
normalize()
scale_sd()
centre_mean()
percentiles()
deciles()
Distribution Metrics
esbl_tests
Example Data Set with ESBL Test Outcomes
impute() is_imputed() get_mice()
impute()
is_imputed()
get_mice()
Impute: Filling Missing Values
ml_xg_boost() ml_decision_trees() ml_random_forest() ml_neural_network() ml_nearest_neighbour() ml_linear_regression() ml_logistic_regression() confusion_matrix(<certestats_ml>) predict(<certestats_ml>) apply_model_to() feature_importances() feature_importance_plot() roc_plot() gain_plot() tree_plot() correlation_plot() get_metrics() get_accuracy() get_kappa() get_recipe() get_specification() get_rows_testing() get_rows_training() get_original_data() get_roc_data() get_coefficients() get_model_variables() get_variable_weights() tune_parameters() check_testing_predictions() autoplot(<certestats_ml>) autoplot(<certestats_feature_importances>) autoplot(<certestats_tuning>)
ml_xg_boost()
ml_decision_trees()
ml_random_forest()
ml_neural_network()
ml_nearest_neighbour()
ml_linear_regression()
ml_logistic_regression()
confusion_matrix(<certestats_ml>)
predict(<certestats_ml>)
apply_model_to()
feature_importances()
feature_importance_plot()
roc_plot()
gain_plot()
tree_plot()
correlation_plot()
get_metrics()
get_accuracy()
get_kappa()
get_recipe()
get_specification()
get_rows_testing()
get_rows_training()
get_original_data()
get_roc_data()
get_coefficients()
get_model_variables()
get_variable_weights()
tune_parameters()
check_testing_predictions()
autoplot(<certestats_ml>)
autoplot(<certestats_feature_importances>)
autoplot(<certestats_tuning>)
Create a Machine Learning (ML) Model
any() all() mean() sum() prod() min() max() pmin() pmax() range() sd() var() median() fivenum() quantile() IQR()
any()
all()
mean()
sum()
prod()
min()
max()
pmin()
pmax()
range()
sd()
var()
median()
fivenum()
quantile()
IQR()
Mathematical Functions With Global na.rm
na.rm
moving_average() moving_sum() moving_Q1() moving_Q3() moving_fn()
moving_average()
moving_sum()
moving_Q1()
moving_Q3()
moving_fn()
Moving Average
normality()
Normality Analysis
qc_rule1() qc_rule2() qc_rule3() qc_rule4() qc_rule5() qc_rule6() qc_rule7() qc_rule8() qc_rule_text() qc_test()
qc_rule1()
qc_rule2()
qc_rule3()
qc_rule4()
qc_rule5()
qc_rule6()
qc_rule7()
qc_rule8()
qc_rule_text()
qc_test()
Quality Control (QC) Rules
regression() plot(<certestats_reg>) autoplot(<certestats_reg>)
regression()
plot(<certestats_reg>)
autoplot(<certestats_reg>)
Fast Regression Models
remove_outliers()
Remove Outliers
row_function()
Apply Function per Row
weighted_mean() weighted_median() weighted_Q1() weighted_Q3() weighted_fn()
weighted_mean()
weighted_median()
weighted_Q1()
weighted_Q3()
weighted_fn()
Weighted Mean